(2022) original software publication nsdpy: a package to dna sequences from

HIGHLIGHTS

SUMMARY

    Sequences can be downloaded in different formats (fasta, GenBank, INSDSeqXML, TinySeqXML) but only formats relatively complicated to parse (GenBank and INSDSeqXML) contain both the sequence and the taxonomic lineage, thus it is necessary to have coding knowledge to obtain the file format desired by the users. At last, the downloaded sequences can be sorted to different fasta files according to a selected taxonomic level using the following mutually exclusive options: -k (kingdom), p (phylum), -s (the lowest taxonomic level in the lineage) or preparing one file for each of the taxa specified by the . . .

     

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