The gen-era toolbox: unified and reproducible workflows for research in microbial genomics

HIGHLIGHTS

  • who: Gloeobacterales and collaborators from the University of Liu00e8ge, Liu00e8ge have published the research: The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics, in the Journal: (JOURNAL) of October/24,/2022
  • what: The authors report here the implementation of 13 Nextflow workflows, supported by 14 Singularity containers, which cover the most common genomic applications related to microbial taxonomy, including metabolic modeling.
  • future: The specification of the taxonomic rank makes Genome-downloader.nf resilient to changes in the NCBI Taxonomy (see e_g_[24]) that could occur in the future.
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