HIGHLIGHTS
SUMMARY
With the sequencing of genomes becoming routine, it is evident that structural variants (SVs) play a major role in genome variation. There are many kinds of SVs, e_g, indels, inversions, and translocations. In Brassica rapa, gene CNV has been shown to be involved in morphological variation and an analysis of the poplar "pan-genome" revealed at least 3000 genes affected by CNV. In a highly selfing organism, this is obviously highly implausible, and these SNPs were flagged as spurious: presumably, products of cryptic CNV, which can generate "pseudo-SNPs" when sequencing reads from non . . .
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