Hotspot: hierarchical host prediction for assembled plasmid contigs with transformer

HIGHLIGHTS

• who: Yongxin Ji and colleagues from the Department of Electrical Engineering, City University of Hong Kong, Hong Kong (SAR), China have published the paper: HOTSPOT: Hierarchical hOst predicTion for aSsembled Plasmid cOntigs with Transformer, in the Journal: (JOURNAL)
• what: The experiments showed that most plasmids in the same PTU have identical host ranges. The authors implement the Markov Clustering Algorithm (MCL) (Enright et_al, 2002) to group highly similar proteins into the same cluster. As plasmid identification requires a separate set of efforts, the following experiments focus on the performance of host prediction for input plasmids . . .
  

   

  

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