Practical guidelines for the comprehensive analysis of chip-seq data

HIGHLIGHTS

• who: Education et al. from the InstituteThe University have published the Article: Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data, in the Journal: (JOURNAL) of November/14,/2013
• what: This analysis assesses the rank consistency of identified peaks between replicates, and outputs the number of peaks that pass a user-specified reproducibility threshold (e_g, IDR=0.05).
• future: It is strongly recommended that mapped reads from a control sample be used (e_g from input DNA) although some peak callers can use GC content or mappability as information necessary to assess the . . .
  

   

  

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