HIGHLIGHTS
- What: The model showed substantial improvements over the strongest baseline HIGH-PPI, which also incorporates multi-scale information for enhanced predictions, with an increase of 13.81% in the BFS split, 13.06% in the DFS split, 7.69% in the Random split, (Fig 2c and Fig S1). The approach provides an effective perspective for integrating unbalanced multi-scale data. The authors show the efficacy of MUSE across various interaction prediction tasks, highlighting the superiority of integrating atomic structure scale information into molecular interaction predictions. Next, the authors introduce how the authors apply the framework to link . . .

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