Baalchip: bayesian analysis of allele-specific transcription factor binding in cancer genomes

HIGHLIGHTS

  • who: Florian Markowetz from the (UNIVERSITY) have published the research work: BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes, in the Journal: (JOURNAL)
  • what: Using 548 ENCODE ChIP-seq and six targeted FAIRE-seq samples the authors show that BaalChIP effectively corrects allele-specific analysis for copy-number variation and increases the power to detect putative cis-acting regulatory variants in cancer genomes. All of these approaches are designed to examine the allelic imbalances in diploid samples and do not address copy-number differences between the two alleles, a ubiquitous feature . . .

     

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