Benchmarking automated cell type annotation tools for single-cell atac-seq data

HIGHLIGHTS

• who: . et al. from the Duke University, United States have published the Article: Benchmarking automated cell type annotation tools for single-cell ATAC-seq data, in the Journal: (JOURNAL)
• what: The last set of experiments was designed to investigate the performance of methods when there were ATAC-specific cell types by manually removing some cell types in the reference scRNA-seq data.
• how: For accuracy the authors considered both the overall accuracy as well as accuracy on ATAC-specific cell types. Conos and Seurat v3 were the two fastest methods and Conos was . . .
  

   

  

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