Bubblegun: enumerating bubbles and superbubbles in genome graphs

HIGHLIGHTS

• who: Bioinformatics and colleagues from the Medical Faculty, Institute for Medical Biometry and, Heinrich Heine University Duu0308sseldorf, Duu0308sseldorf, Germany have published the research: BubbleGun: enumerating bubbles and superbubbles in genome graphs, in the Journal: (JOURNAL)
• what: The authors show that BubbleGun is considerably faster than vg especially in bigger graphs where it reports all bubbles in less than 30 min on a human sample de Bruijn graph of around 2 million nodes. The authors focus on bi-directed graphs (Supplementary Section 1.5), where sequences are represented by nodes with a left and right side . . .
  

   

  

  If you want to have access to all the content you need to log in!

  Thanks :)

  Username or E-mail:

  If you don't have an account, you can create one here.