Changes in the nasal microbiota of pigs following single or co-infection with porcine reproductive and respiratory syndrome and swine influenza a viruses

HIGHLIGHTS

• who: Tiphany Chrun and collaborators from the Sequence files were uploaded onto a remote Linux server provided by the University of Surrey and quantitative insights into microbial ecology , (QIIME2) was used for all processing and analyses carried out (qiime2-20202) [40]. Files were imported and converted into a , file (qiime tools import). Quality control program , [41] was used to trim reads at positions , and , from the forward reads and at positions , and , from the reverse reads to remove low quality reads (qiime dada, denoise-paired). Alignment was performed on the sequences (qiime alignment mafft) and this alignment . . .
  

   

  

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