Comparing multiple locus variable-number tandem repeat analyses with whole-genome sequencing as typing method for salmonella enteritidis surveillance in the netherlands, january 2019 to march

HIGHLIGHTS

SUMMARY

A total of 439 isolates that had both WGS and MLVA typing done were included for analyses. For 439 isolates that had both MLVA and WGS typing done, 404 (92%) had the same MLVA type as at least one other case. Based on cgMLST, 313 isolates (71.1%) belonged to 48 clusters of at least two isolates based on cgMLST with a distance of #5 alleles. The ability to differentiate between all 439 isolates was calculated based on Simpson`s diversity index, showing that cgMLST had a higher diversity of "types" than MLVA, with . . .

 



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