HIGHLIGHTS
- who: Bioinformatics, and Editor Karsten, Borgwardt from the Institute of Ecology and Evolution, University of Edinburgh, Edinburgh , FL, UK have published the article: gofasta: command-line utilities for genomic epidemiology research, in the Journal: (JOURNAL)
SUMMARY
Phylogenetic analysis, as is commonly performed in genomic epidemiological contexts (reviewed in Gardy and Loman, 2018), requires that sequences be aligned to each other. In this routine, the alignment is trimmed to set reference coordinates using the --start and --end flags and the trimmed regions are replaced with Ns to preserve reference length with the --pad 4033 . . .
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