Loci associated with variation in gene are influenced by the presence of growth hormone transgene

HIGHLIGHTS

• who: McClelland et_al BMC Genomics and colleagues from the Diversity at Cornell University using their discovery pipeline implemented in TASSEL v, [75, ]. DNA was digested with the restriction enzyme Eco, and strands were identified using individual-specific barcodes. Tags with fewer than , reads per tag were removed. Barcoded sequences were combined into a list of unique sequence tags. These tags were then aligned to the coho salmon reference genome (NCBI Assembly GCF_002021735., Okis_V1), and the genomic position of the tags was recorded. SNP discovery was performed using the aligned tags with genotypes determined by a binomial likelihood . . .
  

   

  

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