HIGHLIGHTS
SUMMARY
Various kinds of lncRNAs (i.e., lincRNAs (Long intergenic non-coding RNA), intronic lncRNAs, anti-sense lncRNAs, and sense lncRNAs) were nominated by cuffcompare (Fig 1). The transcripts of neighboring proteincoding genes located in the 100 kb upstream and downstream of DE-lncRNAs were saved and subjected to co-expression analysis, to identify the putative target genes of DE-lncRNAs in cis-regulation. Among the miRNAs predicted to be exclusively associated with DE-lncRNAs in FL478, osa-miR2926 related to lncRNA.2-FL is most probably supposed to be involved in salt stress tolerance . . .
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