HIGHLIGHTS
- who: G and collaborators from the Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA have published the paper: PhaMMseqs: a new pipeline for constructing phage gene phamilies using MMseqs2, in the Journal: (JOURNAL) of August/30,/2022
- what: The authors describe the Python package PhaMMseqs which uses MMseqs2 for pham assembly and the authors evaluate the key parameters for optimal pham assembly of sequence- and functionally related proteins. The authors focused on 6 of these parameters that principally define how MMseqs2 finds homologous gene pairs and how it interprets the homology network into . . .
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