Rapid genotyping of targeted viral samples using illumina short-read sequencing data

HIGHLIGHTS

• who: Alex Vu00e1radi and colleagues from the Department of Metagenomics, University of Debrecen, Debrecen, Hungary, Department of Laboratory have published the article: Rapid genotyping of targeted viral samples using Illumina short-read sequencing data, in the Journal: PLOS ONE of March/29,/2022
• what: The low read depth can be a limitation of the approach and any reference-based genotyping method. This work reports a pipeline capable of rapid and automated analysis of viral genomes obtained by NGS. With the design presented in this study, the authors were able to obtain high-accuracy consensus genomes . . .
  

   

  

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