Raptor: a fast and space-efficient pre-filter for querying very large collections of nucleotide sequences

HIGHLIGHTS

  • who: Enrico Seiler from the of Mathematics and Computer Science, Freie Universität Berlin, Berlin, Germany have published the article: Raptor: A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences, in the Journal: (JOURNAL) of July/23,/2021
  • what: The authors propose a data structure, called binning directory, that can distribute approximate search queries based on an extension of the recently introduced Interleaved Bloom Filters (IBFs) (Dadi et_al, 2018). In the following, the authors report the computational experiments for Raptor. The experiments show that allocating only 1 GiB for . . .

     

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