Rnnotator: an automated de novo transcriptome assembly pipeline from stranded rna-seq reads

HIGHLIGHTS

  • who: Jeffrey Martin et al. from the (UNIVERSITY) have published the paper: Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads, in the Journal: (JOURNAL)
  • what: For transcripts with deep sequencing coverage the authors demonstrate that Rnnotator is capable of producing full-length transcript assemblies. The authors demonstrate that a de novo assembly approach can discover transcripts derived from sequences which are not present in the reference genome.
  • how: Using these criteria as guidelines the authors developed a de novo transcriptome assembly pipeline to reconstruct high quality transcripts from . . .

     

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