Towards reliable whole genome sequencing for outbreak preparedness and response

HIGHLIGHTS

  • who: David F. Nieuwenhuijse from the (UNIVERSITY) have published the article: Towards reliable whole genome sequencing for outbreak preparedness and response, in the Journal: (JOURNAL)
  • what: The authors explore the use of metagenomic compared to specific amplicon- and capture-based both on the Nanopore and the Illumina for generation of genomes of Usutu virus Zika virus West Nile virus and Yellow Fever virus. The authors show that amplicon-based Nanopore can be used to rapidly obtain sequences in samples with a viral load up to Ct 33 and capture-based Illumina is the most sensitive . . .

     

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