Trimming and decontamination of metagenomic data can signi�cantly impact assembly and binning metrics, phylogenomic and functional analysis

HIGHLIGHTS

SUMMARY

Since Page 2/20 assemblies are made of contigs, some key metrics for evaluating assembly quality are total length of all assembly contigs, total number of assembly contigs, the number of bases of the largest contig in an assembly, and GC content. IMG/M GENOME # Raw Fastq File M-Tag (Plot-Season) 9672.8.140931.GTAGAG.fastq.gz 9117.4.122649.GTAGAG.fastq.gz* 9041.8.119154.GTCCGC.fastq.gz 9117.5.122651.GTCCGC.fastq.gz 10158.6.150237.GTGAAA.fastq.gz* 11260.5.198617.GTGAAA.fastq.gz 9053.2.119381.GTGAAA.fastq.gz . . .

 



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