Two commercial pig lines using trio-based

HIGHLIGHTS

• who: De novo mutation and collaborators from the genome (Sscrofa111, GenBank assembly accession number GCF_000003025.6) with the Burrows-Wheeler Aligner (BWA-mem v.0.7.17) [59] to generate a BAM file for each individual. All BAM files were sorted and indexed with SAMtools (v.1.9) [60]. Sequence alignment and variant calling was performed on the High Performance Computing (HPC) cluster at Wageningen University and Research. Nine trios (, samples) were excluded because of poor data quality including large numbers of discordantly mapped reads. SV detection have published the research: two commercial pig lines using trio . . .
  

   

  

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