HIGHLIGHTS
SUMMARY
The collective genome of plant-associated microbiota exceeds the host genome in both size and number of functions by far and is thus referred to as its second genome (Berendsen et_al, 2012; de la Fuente Cant et_al, 2020). Consequently, these plant microhabitats harbor specific microbiota connected by endophytic communities (Hardoim et_al, 2015), that may differ on very small spatial scales (Ottesen et_al, 2013; Wassermann et_al, 2019b; Kusstatscher et_al, 2020). Endophytes may either migrate through the vascular system of plants (James et_al, 2002; Compant et_al, 2005, 2021) or move through the apoplast (Gasser et_al, 2011 . . .
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