Accuracy of genomic prediction using multiple atlantic salmon populations

HIGHLIGHTS

• What: The authors evaluated the accuracy of multi- and across-population prediction of breeding values for resistance to amoebic gill disease (AGD) using all single nucleotide polymorphisms (SNPs) on a 55K chip or a selected subset of SNPs based on the signs of allele substitution effect estimates across populations using both linear and nonlinear genomic prediction (GP) models in Atlantic salmon populations. The SNP discovery process involved running a GWAA within a population while excluding the validation set with the model described above using the GCTA software (-mlma option). Most of the genetic correlation estimates in the . . .
  

   

  

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